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This is a web server that enables the analysis of DNA sequences using mouse-specific position weight matrices from the TRANSFAC™ database. Help on using this server can be found by clicking on the linked features within the page and using the FAQ.

Upload sequence in FASTA format



Limit: 5K base pairs
Select transcription factor matrices to scan with

Up to 10 may be selected.
[Hold down the Ctrl key to
select multiple factors]



Upload evidence scores [Optional]



The number of evidence scores MUST be the same length as the number of basepairs in the uploaded sequence file
Select the order of background model to use
0 1 2 3

Press to submit information, or to reset fields.

The development of the ProbTF is supported by grants from the National Institute of General Medical Sciences (R01-GM072855) and the National Institute of Allergy and Infectious Diseases (U54 AI54253).
Server Version: 1.0 June 2007