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This is a web server that enables the analysis of DNA sequences using mouse-specific position weight matrices from the TRANSFAC database. Help on using this server can be found by clicking on the linked features within the page and using the FAQ.

Upload sequence in FASTA format

Limit: 5K base pairs

Select transcription factor matrices to scan with

Up to 10 may be selected.
[Hold down the Ctrl key to
select multiple factors]

Upload evidence scores [Optional]

The number of evidence scores MUST be the same length as the number of basepairs in the uploaded sequence file
Select the order of background model to use
0 1 2 3

Press to submit information, or to reset fields.